Andrew J. Ballard
Andrew Ballard is a researcher whose work connects machine learning with molecular simulation and protein structure prediction. In 2017, he applied energy-landscape ideas to machine learning and coauthored a neural-network method for free-energy estimation in 2020. At DeepMind, he contributed to AlphaFold's CASP14 team and later work on the AlphaFold Database. In 2024, he served as a Core Contributor on AlphaFold 3, which predicts structures of complexes across proteins, nucleic acids, small molecules and ions.
Timeline
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2017
Energy landscapes for machine learning
In 2017, he and six coauthors apply molecular potential-energy landscape methods to machine-learning training and predictions.
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2020
Learning free-energy mappings
In 2020, he and colleagues recast targeted free-energy perturbation as a machine-learning problem, using a neural network to increase overlap between sampled distributions.
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2020
AlphaFold at CASP14
At CASP14 in 2020, he contributes to DeepMind's AlphaFold team as its model reaches a median GDT score of 92.4.
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2021
Protein structures at atomic accuracy
In 2021, he receives equal authorship credit on the Nature paper that presents a neural-network model for protein-structure prediction with atomic accuracy.
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2021
AlphaFold at proteome scale
In 2021, he coauthors DeepMind's account of the AlphaFold DB, which makes predictions for reference proteomes freely available.
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2024
Core contributor to AlphaFold 3
In 2024, he serves as a Core Contributor at Google DeepMind on AlphaFold 3, which predicts structures of complexes containing proteins, nucleic acids, small molecules, ions and modified residues.
Sources and credits
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- Perspective: Energy Landscapes for Machine Learning
- Targeted free energy estimation via learned mappings
- AlphaFold: a solution to a 50-year-old grand challenge in biology
- Highly accurate protein structure prediction with AlphaFold
- Enabling high-accuracy protein structure prediction at the proteome scale
- Accurate structure prediction of biomolecular interactions with AlphaFold 3



